At one point in my career, an administrator in my university said (paraphrased) "Being able to promote yourself with qualifications in interdisciplinary areas is nice, but after all .... interdisciplinary is just a word." Which is to say, often the only ones who seem to appreciate the added talents required to be truly interdisciplinary are those who themselves also are.
With this example, recognize that interdisciplinary is not the norm, it is the exception. In shortthis regard, when you are at a PhD level now, have a keen interest in what is otherwise considered as interdisciplinary studies, and have an eye on going into academic fields later, focus on one discipline where you find your greatest passion, allowing. Allow that you also demonstrate how your focused studies can be used in the interdisciplinary field. Follow up with post-doctoral studies that broaden your experiences in the companion interdisciplinary field.