Questions tagged [software]

Queries related to various software used in academia. Questions shall not address highly technical aspects of the software but shall address features/issues highly relevant to academia. For questions concerning computer code written or used in the context of a research project or other academic endeavour (including questions on licensing, ownership, sharing, distribution, and formatting of academic source code), use the `code` tag instead.

Filter by
Sorted by
Tagged with
2
votes
1answer
47 views

How to export search results from Elsevier?

I am doing a systematic review and I am cataloging my searches. I've already exported the search results from IEEE, and from Springer, with one click to an CSV file. So I wonder how to do the same ...
7
votes
3answers
330 views

How to accurately digitize plot data from figures available as vector graphics?

Measurement data in publications is often provided only within figures, while the original data is not available. There are some very useful tools around to digitize such data, such as the web ...
0
votes
2answers
58 views

Publishing a paper in an academic conference being someone who works in the industry

I have been working in the industry of software engineering for 5 years so far. Lately, I am planning to take a PHD, I am interested in software architecture and quality, something that started ...
22
votes
4answers
3k views

What is the status of foreign cloud apps in German universities?

From what I heard, in German universities there is a push against foreign cloud applications such as Microsoft Office 365, Google G Suite, Github, and even Doodle. The DFN offers some alternatives, ...
1
vote
0answers
47 views

Link to ORCID when revising a paper on editorial manager

When I started revising my paper on Editorial Manager, it required me to link to my ORCID (see the attached). I do have an ORCID account, and after I logged in, nothing happened, i.e., the ORCID was ...
0
votes
1answer
47 views

How to make a bachelor thesis out of optimizing /updating an application? [closed]

I work for a company and want to write my bachelor thesis there. This company has a Quality Assurance Application written in Python, that is very unstructured and follows no design pattern. My job ...
6
votes
2answers
160 views

What software do you use to keep up to date on literature, and if Google Scholar, how do you avoid information overload?

I see a lot of people use Google Scholar and ResearchGate alerts, but I find those alert systems too overwhelming to the point I get inundated and treat them like spam. Perhaps I'm not using them ...
1
vote
0answers
43 views

Co-authors that quit during software development and such software is using later in a patent, should they be added as coauthors/inventors? [closed]

We have a situation in which we developed some software, where four previous members of our research group participated some time ago. Then they left the group, and said that from then on, they did ...
2
votes
1answer
123 views

Is there any free alternative to Mendeley desktop app on Windows?

I have been using Mendeley for a very long time now. I use it for organizing and reading articles. I just noticed that it keeps removing files randomly from the folders and groups. I don't know the ...
5
votes
0answers
136 views

Can free plagiarism tools cause plagiarism false positives when students upload content checked with free tools to the Turnitin?

As a lecturer I have advised many students to use a free plagiarism checker tool and get verified your work is plagiarism free, when they don't have access to a widely-used paid tool like Turnitin. I ...
2
votes
2answers
95 views

How can I find the altmetrics for a specific paper?

Alternative metrics for a paper, include not just the citations in other academic journals, but also all Twitter mentions, citations in Wikipedia, citations across the Stack Exchange network, etc. The ...
1
vote
0answers
99 views

How to make this kind of figures [closed]

First of all I wanna say I'm not sure if this is the right place to ask this question, so apologies in advance. My objective is something like that: Which software allows these kind of figures? Many ...
7
votes
1answer
301 views

Timed text editor

Looking for a very specific tool. I want to give my students a link to a text editor. When they open that link, they see a question and instantly a countdown timer starts. Once the timer is over, ...
4
votes
1answer
128 views

Program to manage research

I'm searching for a PC program, that syncs to the cloud (to Dropbox?), that will allow me comfortable management of PhD research, kind of a digital lab book. That includes - Comfortably adding daily/...
2
votes
1answer
107 views

Ethics: donation link on github repository for an academic side project

I'm a grad student in the United States with a strong programming background in a field where most people have very little programming experience. A while ago a faculty member I know requested my help;...
4
votes
2answers
499 views

I am looking for a way to remotely teach a class

So I am a single individual and do not have access to any university schemes related to my issue. I would like to be able to use my wacom device (an pen that allows me to write down on the computer) ...
0
votes
1answer
218 views

How can a present software-engineer (with experience of 5 years at least) turn into a physics professor? [closed]

There are often many people who switch careers midway. Some from software engineering to a product management role which is quite popular given relevance of previous career to current career. Another ...
0
votes
3answers
105 views

Can I include NIST data in my research software which lies on GitHub?

For some research software I have written, I needed some atomic data from NIST. I wanted to put that software onto GitHub (MIT license) but I am not sure if I am allowed to simply also upload the NIST ...
2
votes
0answers
111 views

State-of-the-art animated handwritten slideshow software

This is a remake/sequel of the 2015 question Handwritten presentation slides?. Surely much has changed in these five years. I have seen lots of presentations combining typed text/equations and ...
3
votes
1answer
80 views

Software for recommending papers — does this exist? [duplicate]

I spend a lot of time on google scholar making sure I haven't missed relevant literature. Usually this means scrolling through the "cited by" list one by one for at least 5-10 major papers ...
1
vote
0answers
69 views

Alternatives to Mendeley or Qiqqa to manage PDF and autoextract meta-data?

Having been a long term user of both Mendeley and Qiqqa, I have to switch to another tool that offers in particular: the ability to bulk upload PDF and autoextract meta-data / bibTex info manage all ...
2
votes
3answers
222 views

Are there universities with policies that default intellectual property decisions to faculty?

For context, at a US-based institute there is a typical business-like policy stating intellectual property developed by faculty is owned by the institute. Likewise, faculty are required to submit ...
1
vote
1answer
68 views

Software tools for orgainising education lab appointments

Due to the Coronavirus situation it is required to adapt teaching activities to reduce risk of infection. Several courses have laboratory assignments that require physical presence. It is therefore ...
26
votes
1answer
4k views

Why did SoftwareX’ impact factor drop from 4.5 SJR to 0.4 last year?

I planned to submit one of my long-developed software pieces to the prestigious journal SoftwareX. I was preparing for this for a while and making my code ready, and was just about to submit and ...
4
votes
1answer
247 views

Software for personal remote monitoring of exams

I suppose many instructors are looking for such a software. I give an exam that requires pencil and paper and computer software. I want to be able to look at computer screens students are using, I ...
2
votes
1answer
139 views

Are there systems to automatically blind a paper?

I am looking for systems to make a research paper blind (i.e., remove all information about authors, affiliations, maybe even anonymize self-references to previous work) and do this automatically, i.e....
1
vote
0answers
61 views

Are there reference managers which can develop/build library of references without importing/downloading PDF files in a personal collection?

In a situation where one has PDFs which one would like to have a library of references for, I notice that reference management providers (specifically Mendeley and Endnote) require that these PDF ...
-1
votes
2answers
99 views

Tools for creating and managing a Data Dictionary [closed]

I'm looking for tools to create a data dictionary for my project's data. We have a large database of many variables, and I would like to create a data dictionary that describes what each variable ...
1
vote
1answer
81 views

Keyword tagging across scientific papers making it searchable

One year into the research project I have now a nearly exhaustive list of keywords / themes characterising my topic. There are about 100 words, though some of them are so closely related that probably ...
4
votes
2answers
99 views

Tools for PDF presentations commenting that respect slides

For my problem-solving classes I prepare presentations which include a reminder on the theoretical parts, statements of the problems to be solved, some (partial) solutions, tips and so on. These ...
2
votes
0answers
106 views

CV formatting and writing software? [closed]

Is LaTex everyone's go to for writing a professional CV? Or are there other niche tools/packages that you use to format and write it? i.e. something like a WYSIWG graphical editor with preset ...
1
vote
1answer
53 views

How to publish review of commercial software

I really like software product X and been using it for >6 years. I am unaffiliated and never have been linked to company or anyone involved with X. I would like to publish a paper that explains why ...
2
votes
0answers
125 views

Remote lecturing: best software approach [duplicate]

With the recent outbreak of covid-19 many of us will need to think about remote means of teaching. The option for me that seems ideal would be the capacity to broadcast exactly what is on my screen ...
1
vote
1answer
114 views

In addition to the grammerly software, are there other better tools in English writing?

For non-English speakers, are there other useful tools besides grammerly software in English writing? Mainly check whether the sentence is authentic.
12
votes
3answers
2k views

I used a fork of a GitHub repository whose paper I cited – should I also cite the fork?

I want to cite a GitHub repository in scientific publications. The repository that I used is a fork version of the original GitHub repository which is accompanied by a paper. Both repositories are the ...
4
votes
2answers
212 views

How to work in academic research as an outsider/experienced software engineer?

I would like to have advice on how a software engineer with a decent (>10 years) of industry experience can join a team doing academic research in the areas of physics, chemistry, biology or climate ...
0
votes
0answers
42 views

Are there software libraries or registries like ASCL.net for other fields in the physical sciences, Physics in particular?

The question Roadmap and possible pitfalls for a first-time software author to publish a paper on a Python package? explains the road I've started on. I just noticed that Skyfield, a software package ...
6
votes
1answer
451 views

Potential consequences for a PhD student using a cracked software

A friend of mine, along with ~10 of their colleagues, recently received an email from the IT department saying the department is investigating those students for using two pieces of cracked software. ...
31
votes
5answers
5k views

Can open-source software be peer-reviewed and published?

My colleague and I have developed a software tool and intend to release it open-source. This tool is specifically for tasks in my field but we think it would be helpful for the wider community. Our ...
4
votes
1answer
139 views

Roadmap and possible pitfalls for a first-time software author to publish a paper on a Python package?

I'm not a software developer by trade but I am in the process of writing a Python package which models an experimental apparatus and physical process and generates simulated data. Results can be used ...
2
votes
2answers
149 views

How to work authorship of software developed with another University

I am supervising a PhD student, enrolled at another University, where the co-supervisor is employed. We developed some useful software in her thesis and published 3 papers. In this development another ...
1
vote
3answers
213 views

Can I use open-source code for a simulation for my research?

I am working on a paper and I found open-source code that I could use for running a simulation. Should I write my own code for that simulation? Will it be enough if I refer to the code in my citations/...
0
votes
1answer
93 views

What will be the research methodology if you are developing a generic software [closed]

I'm developing a generic software for the unorganised retail sector. The design is completely based on the literature review that has been conducted. The only problem is that since I'm not doing any ...
3
votes
1answer
247 views

Is it possible to work full time and do a part time PhD in software engineering in England?

Is it possible to work full time and do a part time phd in the area of software engineering in England saying that I want to use my job earnings to pay my tuition fees? And if I start a part time PhD ...
2
votes
2answers
274 views

What are the main practical complications/challenges to using Linux as your full time OS, particularly as faculty in Biology/Ecology?

I am an ecology post-doc and considering switching from Windows to Linux for my main work computer (I am not a mathematical modeller). I have used Linux before and I am aware that, with effort, one ...
58
votes
10answers
7k views

How can a software developer best volunteer to help childhood cancer research? [closed]

I have 30 years of professional experience as a software engineer and I'm at the point in my career where I can volunteer lots of time. I have helped with several childhood cancer organizations over ...
2
votes
2answers
94 views

How to do a literature review on practical research (thesis)?

Some background, for my bachelor of science degree I have to do a practical research (thesis) for a company that develops software. At the end of my Introduction chapter I arived at the following ...
-3
votes
1answer
169 views

What are good methods for clarifying student uncertainty? [closed]

A primary task of professors is communication with their students. Communicating typically involves lecturing, clarifying uncertainties, and receiving feedback. Lecturing happens at fixed times, but ...
3
votes
1answer
282 views

Which authors to cite for open source software

While I have worked on open source software myself I'm, strangely, uncertain about how to cite it in a paper. I do know how to cite software itself, I'm just uncertain which author(s) to attribute it ...
2
votes
0answers
90 views

Best tool for digitally marking assignments? [closed]

I was wondering if anyone could recommend a good piece of software for marking digital (PDF) assignments. Specifically, I am marking a first-year mathematics course, and need to do the following for ...

1
2 3 4 5 6