Questions tagged [pubmed]

Questions concerning NCBI's repository of citations for biomedial literature, as well as Pubmed Central, a repository of open access publications, and Pubmed Open for post-publication peer review.

Filter by
Sorted by
Tagged with
3
votes
1answer
54 views

Do medical journals require the authors to upload their raw data in addition to the manuscript?

A clinical trial paper published in one of the most prestigious medical journals (The Lancet) was found by the readers to be using fabricated data. This paper had a huge effect in the world like ...
0
votes
1answer
74 views

Is it possible for a published paper with PMID to not have a PMCID?

I’m trying to find the PMCID (Pubmed Central ID) for a paper, but it does not have one. It has a PMID (Pubmed ID). Under what circumstances does a paper have a PMID but not PMCID?
0
votes
0answers
16 views

Recommendations for XML PubMed conversion services

Looking for recommendations for an XML conversion service to meet PubMed technical requirements. There are so many out there so would prefer to go with one that someone has used before and recommends. ...
0
votes
0answers
36 views

Will PubMed index a discontinued journal?

I had a journal running for 3 years, started in 2012. I have about 60 articles, all with open peer review but I want to start the journal again with new improvements. Can I get indexed in my journal ...
1
vote
1answer
150 views

Equivalents of PubMed in other fields

I work in biomedical sciences, and whenever I need to look up an article - or find recent references about a certain field of biology - I just go to PubMed, because it collects information from the ...
2
votes
1answer
188 views

Searching for specific characters in publication titles

Is there any way to search for articles that include a specific character in their name? For instance, suppose you want to find articles that include $, £ or € in their title. When I have tried to ...
9
votes
2answers
286 views

Find papers authored by a specific number of authors

For some concrete study, I need to find for some keywords, papers that have just one author. I used PubMed, Scopus and ISI Web of Science, but in any case, I could not find a way to filter ...
1
vote
1answer
50 views

How do I find the most cited authors given one or more MESH terms?

I would like to be able to give some academic database (like pubmed) a list of MESH terms (MESH: Medical Subject Headings created by the National Library of Medicine), then select papers by authors ...
0
votes
1answer
78 views

Different behaviour with wildcards on PubMed using quotation marks or not

In my understanding of wildcards I would assume that this search string (in title & abstract fields) would give a result of 0. telerobot*[tiab] NOT *robot*[tiab] But it doesn't. The result is 49....
4
votes
1answer
222 views

How to use MeSH Qualifiers in a PubMed search string?

I want to know how I combine a MeSH term with a qualifier. How do I create a search string on PubMed with it. The exact human readable question would be: All publications with MeshTerm "Locomotion" ...
1
vote
1answer
92 views

How to avoid letters while searching pubmed portal?

I am retrieving disease related articles from pPMC. Some of the articles contain letters starting with "Dear friends" , "Dear Editor", etc. Can these be considered valid articles? How to filter the ...
2
votes
0answers
85 views

Building corpus from PubMed Central [closed]

I am trying to develop a retrieval system for which a corpus is required. Since PubMed hosts many free articles, I decided to use it. However, now I found out that PubMed central has licensing ...
9
votes
2answers
5k views

Bulk download of arXiv (or other publication data set) with metadata AND citations

This is to extend the question: Getting a dump of arXiv metadata I would like to download arXiv in bulk, and found a useful answer above for using this syntax: http://export.arxiv.org/oai2?verb=...
14
votes
3answers
18k views

How to find out who funded a study / research?

It has been proven that the source of funding can have an influence on the results of a research (funding bias, well documented here and here). When we check for pieces of research, for example ...
7
votes
5answers
1k views

How can I get a list of citations for a DoI or PubMed ID?

I'd like to be able to submit a DoI or PubMed ID and find all the papers that cited that paper. In other words, I need a publicly-available citation graph database that covers papers in PubMed. ...
1
vote
1answer
270 views

How can I replicate a search strategy described in a publication?

I found a Cochrane Review from 2012. I would like to perform a new search with the same search strategy to see if there are an updates in this topic. The search strategy is given at the bottom of this ...
1
vote
1answer
180 views

Can I rearrange the given names of authors in Pubmed for importing to EndNote?

When viewing a Pubmed citation, author names are listed in the format Surname Initial Initial. This means that when I am inputting a citation into EndNote I have to either type the names in manually ...
4
votes
2answers
293 views

Author Ambiguity in PubMed Search

Given a (rather large) list of authors, what is the best way to find the number of publications by each author? The big problem here is author ambiguity (which John Smith, etc.) - the author list we ...
12
votes
4answers
4k views

Why aren't all research articles on PubMed?

I was recently doing some research on PubMed and I noticed that, in my field of research (plant science), some articles are referenced and others are not, even for two articles in the same journal... ...