Questions tagged [code]

Questions concerning computer code written or used in the context of a research project or other academic endeavour (including questions on licensing, ownership, sharing, distribution, and formatting of academic source code). For other questions on software (related to academic aspects of using the software rather then developing it), use the `software` tag instead. Generic code questions, e.g. help with debugging, are off-topic and will be closed.

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32 views

What is a good journal that allows programming focused articles? [closed]

In most scientific and engineering journals, the implementation and coding of the solution to a problem is treated with secondary importance. I am curious are there any journal(s) that welcome code ...
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1answer
105 views

Could I include non-academical projects to my CV for phd application?

I have just joined this community and I am going to apply for a CS PhD for Fall 2022. Currently, I am preparing my CV. Since I have been working in the industry as a software engineer for roughly five ...
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1answer
2k views

Misleading Results of Cited Paper

We have developed a novel algorithm, published a paper about it, then after a few months, we "copied" our implementation to a very popular opensource library. A few months after, a paper was ...
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1answer
96 views

Submitting two related papers to two journals simultaneously [duplicate]

I have spent 2+ years working on a project in computational neuroscience that has interest for clinicians and now I am starting to write the paper text. I want to submit it to one of neurology-related ...
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3answers
253 views

My former advisor wants to publish a paper that relies on code that I worked on without giving me any credit. What should I do?

I was in a research group for my MSc. dissertation (computational work) during which I developed quite a bit of code that went on being used in a publication which I co-authored (no code was published ...
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1answer
217 views

Can I create anonymous repositories for double-blind peer review via GitHub organizations?

When submitting a paper to a conference/journal for double-blind peer review, one usually has to anonymize source code, if there is any. In my situation, I have to do it in a form of GitHub repository....
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1answer
205 views

Are advisors supposed to know programming? [closed]

I want to know if, as a Ph.D. student, i can ask my advisor a programming question ? Actually my advisor gave me a coding task, and i want to know how they will verify what i code is right ? i can ...
3
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2answers
331 views

Accused of copying code for autograded assignment [duplicate]

I'm an undergraduate studying computer science at a local community college. Currently, I'm enrolled in an intro computer programming class that I unfortunately am unable to test out of (I asked my ...
6
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5answers
4k views

Could I ask my supervisor to help me coding an implementation of a scientific paper's algorithm

I am stuck at an implementation of a scientific paper's algorithm, could I ask help from staff to code a part with me or even my advisor to do so? Thanks for the clarification.
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1answer
69 views

Would a LaTeX glossary contain program function/method purposes/definitions?

I'm writing my dissertation/thesis and it revolves around a program I have made. The program is a Rubik's cube solver that uses pre-existing solving methods, so nothing that exciting. I'm writing out ...
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0answers
76 views

A measure implementation from my group deviates from an official implementation

In my master's thesis work, I am using several algorithmic measures to assess the difference between conditions. One measure in particular is important to predict 'quality'. This may sound weird in ...
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4answers
4k views

When should one publish code publicly on GitHub: during or after journal review?

Similar to the following question, I have developed a code to produce results in a manuscript that I've written which I wish to now share with the community. But this manuscript, which is currently on ...
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1answer
1k views

arXiv article says that code has been made available with the article, but I cannot find it

I'm reading an article on published a few years ago (https://arxiv.org/abs/1708.08130). It says in the article (p.4 at the bottom) that a Mathematica code was made available "as an auxiliary file ...
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1answer
164 views

Is it SOP for a university course to claim to teach a coding language, and then have the coding portion of the course be completely self taught? [closed]

Is it standard practice for universities to have completely self taught portions of a course? For example, a statistics course that is said to teach R (among other things) and then simply quizzes over ...
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4answers
343 views

Code in a conference paper: should I put license terms there?

I am currently writing a conference paper (an IEEE conf, if that matters) in which I include a piece of code. Pertaining to the license of the code, should I, at the beginning of the code, write ...
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3answers
801 views

Sharing research-related codes and datasets: Split them, or share them together on a single platform?

I want to share both (1) programming codes and (2) datasets related to a research project. While I know some suitable platforms superficially, I cannot gauge their pros and cons in too much depth ...
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2answers
136 views

Using a publicly available code and modifying it to my PhD thesis. Should it be cited in the paper if I have modified the core equation?

I have proposed a new equation and will be implementing it into a publicly available code in the thesis. I have modified the core equation of the program (the main constitutive equation, "Johnson ...
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3answers
155 views

What percentage of the code should be yours in a final year computer science project? [closed]

I have a final year project in Artificial intelligence and I need to make a facial recognition project. I'm confused how to start this project and how plagiarism works in terms of coding? No one would ...
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3answers
1k views

What would you do if the author of a published CS article does not respond to code requests?

Since reproducibility is a major principle or basic norm of scientific experiments, simulations, and computations, what would you do or what to do if the author of a published CS article does not ...
3
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1answer
208 views

Do researchers of deep learning understand the existing codes in detail?

Now-a-days, literature in deep learning is increasing at a rapid rate. One of the key difference with other domains is that almost all research papers in deep learning provide corresponding code in ...
2
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0answers
64 views

How to accurately check for cause of plagiarism for programming assignments with online content

I heard that most of the code plagiarism checkers use MOSS for evaluation. But MOSS doesn't check for any content in GitHub or present on the internet. How do we exactly tackle the problem of checking ...
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2answers
125 views

Job interview for a PhD

I was recently invited to a job interview regarding a PhD. I was told to make a short presentation of a few ideas regarding the project topic. I also have received an overview over the project aims, ...
0
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1answer
146 views

Can a paper be rejected for only detailing an algorithm mathematically and not programmatically (via pseudocode)? [closed]

Imagine you are a peer reviewer presented with a paper that states an algorithm was implemented in python to test an analytical process on large datasets. The details of how the algorithmic process ...
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0answers
45 views

How does one Harvard-style reference borrowed computer code?

I'm writing an academic (working) paper, and in the appendix I display a short program I wrote in Stata, a program used for statistical analysis. I wanted to highlight the syntax with colours, so I ...
18
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4answers
5k views

Why say source code is available with an ArXiv paper when it is not?

I sometimes come across ArXiv papers where the authors claim the source code for the project discussed can be obtained, but on checking the link provided the source code comprises no more than a place ...
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8answers
4k views

Is it common to study mathematics without any computer programming? Why would this be considered acceptable?

MATLAB vs. Python in industry at Operations Research SE contains the following statement: I am a beginning PhD student in math, and I would like to focus on optimization. I am learning programming ...
34
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4answers
5k views

GitHub repository ownership as a PhD student in a lab

I'm a PhD student and use GitHub to track and share code for nearly all of my research projects, most of which are largely coding-based work in the field of remote sensing. Our lab is discussing how ...
1
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1answer
210 views

Is it ok to use Github code by having explicit permission from author for Thesis but without license mentioned on the repository?

I am writing my Master Thesis. I used code from GitHub for my application and did modifications and extended its functionality to adjust my requirements. I am also citing the code in my own code and ...
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0answers
48 views

Can I add code in the supplementary material of my thesis which builds up on an existing library?

I've written a thesis in the context of global illumination. The explorations are purely theoretical, but I've implemented the basic building blocks of the described approach and would like to add ...
4
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1answer
177 views

Using a github code for my journal paper

I'm conducting research on cyber bullying classification. I recently found a github repository containing code on sentiment analysis which looked at different machine learning algorithms, doc2vec + ml ...
20
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8answers
5k views

Could a journal reject an article due to the style or quality of accompanying code?

I'm a student working on a doctoral thesis. We're working on a paper for which I've done most of the coding for the statistical analysis (the field is microbio/bioinformatics). I'm new to coding and ...
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2answers
444 views

Shouldn’t algorithmic problem statements and respective editorials be considered as worthy of publications in academia? [closed]

Shouldn’t the algorithmic problem statements and their editorials designed for online international programming contests, which are published on well known coding platforms like Codeforces, Codechef, ...
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4answers
1k views

Can I justify my PhD if I have mostly adapted existing code instead of writing it myself?

My PhD in computational mechanics (field is materials science) involves writing Fortran subroutines for implementing new constitutive equations. More specifically, my research involves continuum ...
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1answer
2k views

How to cite a github repository that I used for data collection (research paper) [duplicate]

I am working on a research paper where I work with large amounts of data. The data was collected using a python code that I found on someone's Github repository. I was wondering how I would go about ...
2
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1answer
119 views

Appropriate description of image processing algorithm in engineering

I want to write a paper in the field of mechanical engineering. For the evaluation of my experiments, I would like to use image processing. When image processing software is used in my field of ...
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1answer
115 views

Future in Computer Progamming [closed]

Hello fellow Stack Exchange users, I have a question in regards of career opportunities in the Computer Science field. I am a 22 year old currently living in Prince Edward Island, Canada and I have ...
6
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2answers
275 views

Before entering into a computational research PhD, should one gain strong coding & software engineering skills?

Main Question: Should someone gain good computer programming skills/experience through a software engineering job before entering a 5-year PhD program in Computer Science (Tentative specialization: ...
3
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2answers
130 views

Should I make my code and data avaiable online when the article is not accepted yet?

We have received a set of reviews for an article that we had submitted to a journal. The decision by the journal editor is a Major Revision. That means, there is a possibility that the article could ...
2
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0answers
56 views

In the related work section of a dissertation, can I use images and source code from other articles, with attribution?

I'm brushing up the related work section of my master's dissertation, and it would be very useful to include some diagrams and code snippets from other articles on that section (and that section alone)...
2
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2answers
164 views

Find articles that share datasets and code

I am working on some project, in which I would like to find articles where they use some computer code to treat data, and the used datasets and code is totally available (github, personal website, etc)...
3
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2answers
522 views

Creating a secure test environment for a programming lab practical

I'm a senior TA helping out my instructor with restructuring the course in light of the coronavirus causing in-class cancellations at our university. We have tools allowing our students to do their ...
32
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5answers
16k views

Advisor professor asking me for the source code of my dissertation in order to be used by another student

I finished my master's degree (Computer Science) a short time ago, and I don't currently plan to continue my academic studies. My adviser asked me for the source code of the application I developed ...
2
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0answers
102 views

How competitive is it to get Google Cloud Platform credits for research?

The Google Cloud Platform (GCP) offers cloud credits for PhD students who submit a research proposal through their website: https://edu.google.com/programs/credits Does anybody know how competitive ...
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1answer
64 views

Improving on a scientific paper (with source code) - publication of our work possible?

I and my students are working on a paper that has associated source code in GitHub. We are planning to change the architecture of the Deep Learning Network they have used, and check to see if we would ...
3
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2answers
239 views

When Submitting Code To Publisher Must It All Be In The Same Language?

I might have the opportunity to submit a paper to an academic journal and also submit my code for it as well. However, I tend to do my projects across different coding languages because sometimes i'll ...
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1answer
150 views

Is simulation a necessary part of writing a research paper? [closed]

In fields like machine learning, where the validity of your solution is measured on the basis of the accuracy of your model, it is important to have a simulation i.e. write and run code to implement ...
2
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1answer
220 views

bibtex entries for versions of the c++ standard

Where can I find BibTeX entries that help me cite a version of the C++ standard? In a paper I discuss the necessity of trailing return types, which became available in C++11. I want to be able to cite ...
16
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2answers
3k views

How to request source code?

During literature review for my research proposal, I have come across a professor who has published several papers in my field, some closely related to the topic of my own research. In a series of ...
1
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3answers
249 views

Can I use open-source code for a simulation for my research?

I am working on a paper and I found open-source code that I could use for running a simulation. Should I write my own code for that simulation? Will it be enough if I refer to the code in my citations/...
128
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13answers
19k views

Is publishing runnable code instead of pseudo code shunned?

In Computer Science is it preferable to describe algorithms using pseudo code rather than real code? If so, why? I've talked to a few academics who think so but I can't understand why. Some of the ...

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