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I've completed my Masters in Computer Science in India. Here we've had no specialization as such and the subjects assigned have been as per University rules. Now I feel the need to specialize in my area of interest and have found Universities in the US that will allow me to choose subjects that align with my interests. Am I eligible for applying to said universities?

Note - These subjects are still in the Computer Science department in these Universities :(

Will the fact that they're in a different country be the exception wherein pursuing a second Masters isn't a problem?

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    Yes, I have seen many doing this for various reasons. – NeoN Nov 11 '14 at 6:45
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    The other option is to take a Post-Master's Certificate. These are usually geared for industry positions and are part-time degrees while you work, but take less time to complete. – Compass Nov 11 '14 at 14:36
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    Every university is different. My university (in the US) will not grant an MS in computer science to someone who already has one, even from another country. – JeffE Nov 11 '14 at 21:19
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The issues you mentioned in your question should be covered in your Statement of Purpose. That is, you should be willing and able (as you did), to explain why you want to "repeat" the degree (you're not really repeating the courses).

Hopefully, your schools of choice would consider you "superprepared," having completed many courses, but not the ones you plan to take. The danger is if there are weaknesses in your test scores or your grades, it could work the other way by showing that you are a "less good" student who needs to repeat courses.

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