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For my next paper I am going to provide a link to an interactive data visualization created using Rstudio's Shiny framework. How can I properly cite it?

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You could cite it the way you would cite R packages, example: https://www.r-bloggers.com/how-to-cite-packages/

Or you can check out how it is cited following different citation benchmarks using Google scholar. See here on Yihui Xie's page

Or you can indeed cite it as a website, as @ff524 added.

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